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Seemingly easy Build question

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I have a prebuilt full set of source files to write to an FPGA with an NIOS II OS to drop in. This set was built on a different system with a different license. Ideally, I would like to program the FPGA with these files and be done with it, however I'm failing.

Correct me on this: When programming the quartus project I do not have to rebuild and it programs successfully. The error occurs when I try to add the NIOS II part. I THINK it's because when you program in the NIOS IDE it goes through the make process and rebuilds the file before programming which would cause a difference in license files between what is already on the fpga and the OS.

IF that is true, then I can't see any other way of proceeding without re-generating a cpu in the SOPC builder and then recompiling the quartus project. (Which I do NOT want to do... yet).

I'm using Quartus 6.0 and NIOS II IDE 6.0

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